YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16768280
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQADEVSGG QEQPKEQLPT PWLSFFTSPA FLVLIVSHSV HNWGFWTLLT EIPSYMKNIL  60
   61 GKDIKSNALL SSLPYVCMFA MSFVFSSISA QLNNRNCISR STSRKLFNSI GLWIPMVTLV 120
  121 GLGYVNPDQS ELAVVLLCFT VGMNGATYLG FNTNHIDLSP NFAGILMGIT NGVANIMSII 180
  181 APLIVGFIVT NEHDPEQWRI VFFIAAGFYL VGNTLYVIFG KANVQPWNDP PAKPRRNSTP 240
  241 QVESQH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	41	0.91
Non-Cytoplasmic	42	67	0.90
Transmembrane Helix	68	90	0.84
Cytoplasmic	91	105	0.84
Transmembrane Helix	106	125	0.95
Non-Cytoplasmic	126	131	0.86
Transmembrane Helix	132	151	0.91
Cytoplasmic	152	161	0.77
Transmembrane Helix	162	188	0.83
Non-Cytoplasmic	189	199	0.75
Transmembrane Helix	200	219	0.95
Cytoplasmic	220	246	0.88