YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16768108
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLFEGFWVK NKNLTRKNYM RKLQFKLDLL ALLPLELLYF KLGTQAVWLR FPRFFKIQSF  60
   61 WEVFRLLDRV ISSPHFVRVA KTLTYMLYMI HITAALYYAY SDYQGLGQNR WVFSGKGHPY 120
  121 VRCFAFATKT ATSIGKNPKP ERQGEYVFMT VAWLMGVFVF ALLIGQIRDI ISTATRNKHE 180
  181 YRQLEDETLE YMRRLNLSQE VQSRVKMWFQ FTWEQQRTLD ESNILDALPI NLKTDIAISV 240
  241 HIQTLSKVQL FADCEEALLR DLVLKLRAVT FLPGDFVCRK GEVGREMYIV KLGQVQVMGG 300
  301 PSSDVVLATL TEGSVFGEIS LLGINGADRR TADVRSKGYS NLFVLSKSDL NEVIAYYPTA 360
  361 QAILKKRARQ LMRKNAARER EEERERARSA LQADVVIGNP KTPETAPKLL QTVIQALPFE 420
  421 SPAVVLITRG SKRMRRKRQS VQMETIVEPK MEVTGAAETQ DQKGLKTGRC SPDLLSSIQQ 480
  481 ELKSKHKFIN LTDSEKALIS QSANNSLEDM KVVDL

Type	Start	End	Confidence
Cytoplasmic	1	145	0.61
Transmembrane Helix	146	167	0.88
Non-Cytoplasmic	168	515	0.72