YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16768034
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.97
Transmembrane Helix	39	62	0.86
Non-Cytoplasmic	63	82	0.89
Transmembrane Helix	83	104	0.90
Cytoplasmic	105	111	0.75
Transmembrane Helix	112	131	0.93
Non-Cytoplasmic	132	137	0.78
Transmembrane Helix	138	161	0.87
Cytoplasmic	162	168	0.78
Transmembrane Helix	169	191	0.85
Non-Cytoplasmic	192	202	0.83
Transmembrane Helix	203	224	0.90
Cytoplasmic	225	257	0.97
Transmembrane Helix	258	279	0.91
Non-Cytoplasmic	280	291	0.93
Transmembrane Helix	292	313	0.89
Cytoplasmic	314	321	0.86
Transmembrane Helix	322	342	0.88
Non-Cytoplasmic	343	346	0.67
Transmembrane Helix	347	371	0.83
Cytoplasmic	372	381	0.74
Transmembrane Helix	382	404	0.87
Non-Cytoplasmic	405	410	0.87
Transmembrane Helix	411	432	0.89
Cytoplasmic	433	512	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSAPVQNG NGNANGTHIE APCCRDIHGK EPPDGGARAW LVMVSAFLCN GIIFGFINTY  60
   61 GVIHSLLTDR LTKLGDPEAS SKAALIGALA IGTTFLFSTM AGCLTDKIGL RLTTFAGGVL 120
  121 SAGGLLLSSF CTENIGALYF TYGIMFGLGA ALAYTPTLAI LGHYFKRYLG KVSGFVTAGS 180
  181 SVFTVILPPC LDKLLGSYGL EGTLRIMSLV SAFIILCSFV YKPLHPPPEP PKKKPGRSRI 240
  241 NLFLRSIINV EIWKRKRFVI WALCVPLALF GYFVPYVHMM QFVKTTFPGE DVNLPVMCIG 300
  301 ITSGIGRLIF GVIADMPGVN RMYLQQLSLV SIGLVTLLLP LTNSYVILVS FTLVMGLFDG 360
  361 CFISLLGPIA YEICGPSGAT QAIGFLLGLS SIPLTVGPPV AGMIFDSTNS YTLPLILAGL 420
  421 PPLLGSSLLF LIKCVKEEEN GVSAPRAVVL ANGDIEIAGN GHYRSAGTKS SAPLMGATNG 480
  481 INGSAPASPT IQSNGHVDNG TGKLAVTNGS AS