YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16648358
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRRSCSRL SKLYEDCSCV VNDPAPKSAA QRLLNLLQPT PEPELDTTTY FDEYLSGVPL  60
   61 LDDNGDFDDQ LLSRTRRSTS DSVIRPGICT KNCNWSFWAF SITSMIVSWF GSSGRVGNVL 120
  121 VNYRAVAHED KSFAQGLALM MISLLALIPG PIIFGRLIDS TCLVWTKTCN GNGNCQLYDQ 180
  181 TRFRYSLNFL SCLLTFMGLL FDYLVWYYGR NLDIYGDKEA KEEERANRKD QPITPLLAKK 240
  241 SEQE

Type	Start	End	Confidence
Cytoplasmic	1	93	0.95
Transmembrane Helix	94	113	0.89
Non-Cytoplasmic	114	132	0.86
Transmembrane Helix	133	155	0.88
Cytoplasmic	156	185	0.86
Transmembrane Helix	186	206	0.87
Non-Cytoplasmic	207	244	0.86