YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16648044
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPQSEQEYA FLAQMMEQYA RRRLQQQFDQ QLHEINLKMD RQRQLLEQER YRQRQQELQV  60
   61 QREAEEDYES NGNNLNQQYD QYDNAEAEAS YGSPMEAVSD LQSPPLYLPR LPNLPPLPSL 120
  121 PNRPSLGNSP NRNSVLRERI PFAVGPSDAR FFDNPNDPSG ELDSRALEDY EEYAPIEPTT 180
  181 EVATTASKTK IDTPVPAPVP VEPPKLLDAA NTNFHRINPQ SAAAAAVAGV NIPQSKEQPP 240
  241 HELNALINKL QKQSKAPSHL TLVNGGDSSQ EQIVLRQHLG MNSEMGVYIV ALIAGVSAAV 300
  301 TVGLLALGVT W

Type	Start	End	Confidence
Cytoplasmic	1	284	0.76
Transmembrane Helix	285	308	0.92
Non-Cytoplasmic	309	311	0.63