YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16198069
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGASDADKS EAVETEDEVI EVEPDAVPEL EPLEDADQQG TPHLSTAALL ALTKGNTRRL  60
   61 TGTTKSKKGR VSLSLHGNIF AKSRPASFVA GKRVQLRRKL RRDRIMGRFD EARHLDQMRL 120
  121 SHSAQAAKSP ENNNYSLHNR NEEEHLPSEN NVMGKTVVLV GKRRLSPVVS TTFNVEERSE 180
  181 TSLLQQQFEH ENCVTWAMHG GESVMMEETQ NDWYFEQLCK ETESTAPFQL QPLDYKPLDE 240
  241 EQVEPKFTQL VAASCSNITT TSCATNMTGA SSCTVYSIGS VHMQPLPQIN ITYVQQPSDL 300
  301 QQRRPTRHRS LMAQCRRFLR HLSLGQRLVM GFALLVMVGL SLHLADKLVL VITGILSGMG 360
  361 LVFLTYSCPG RN

Type	Start	End	Confidence
Cytoplasmic	1	322	0.89
Transmembrane Helix	323	343	0.89
Non-Cytoplasmic	344	348	0.69
Transmembrane Helix	349	368	0.94
Cytoplasmic	369	372	0.74