YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSR2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEWANAAFA ARRRGDETTR DNAFSYTNSN NTRDPFEGPN YHIAPRWVYN VATVWMFFVV  60
   61 VASTFTNGLV LVATAKFKKL RHPLNWILVN LAIADLGETL FASTISVINQ VFGYFILGHP 120
  121 MCIFEGYTVS VCGIAGLWSL TVISWERWVV VCKPFGNVKF DGKWASAGII FSWVWAAVWC 180
  181 APPIFGWSRY WPHGLKTSCG PDVFGGNEDP GVQSYMLVLM ITCCILPLAI IILCYIAVFL 240
  241 AIHAVAQQQK DSESTQKAEK EVSRMVVVMI LAFCLCWGPY TAFACFAAAN PGYAFHPLAA 300
  301 AMPAYFAKSA TIYNPIIYVF MNRQFRVCIM QLFGKKVDDG SEVSTSKTEV SSVAPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.97
Transmembrane Helix	51	74	0.88
Cytoplasmic	75	85	0.84
Transmembrane Helix	86	108	0.86
Non-Cytoplasmic	109	122	0.76
Transmembrane Helix	123	145	0.87
Cytoplasmic	146	163	0.90
Transmembrane Helix	164	185	0.91
Non-Cytoplasmic	186	215	0.93
Transmembrane Helix	216	245	0.86
Cytoplasmic	246	264	0.94
Transmembrane Helix	265	287	0.90
Non-Cytoplasmic	288	298	0.74
Transmembrane Helix	299	320	0.81
Cytoplasmic	321	356	0.92