YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAMP3_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGQISAVAV LFLSLTVILH GYQIREKEFP KARGYLQYTA TSAEQITTKP LLQLINQRSH  60
   61 ITLASRFKDD YIQMAAETSA IENTAHITMK TVTPVTTKSL PPISSASYTF VRSNNAHMTA 120
  121 SSTDDTIGSG SIAHLPVPTT RASLAIVNYI TGRATQLGGQ TTLPKTFFTA SHKSTTNQRP 180
  181 TLSTNVLGTS TPTHKDRSTT SPVPLVPRPT LVTWSSPAKI GTYEVLNGSR LCIKAEMGLA 240
  241 LIVQEKDLDS ATQRYFNIDP SLTHASGKCD SQKSNLFLNF QGGSVNITFT KEENLYYISE 300
  301 VGAYLTISNT EKTYQGKKNT LMMFETVVGH SFKCVSEQSI QLSAQLQMKT MNIHLQAFDF 360
  361 EGDSFGNVNE CLSDYTVVLP MVAIIVVVIC VVGLSVYKIR QRHQSSAYQR I

Type	Start	End	Confidence
Signal Peptide	1	21	0.97
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	376	0.99
Transmembrane Helix	377	397	0.94
Cytoplasmic	398	411	0.92