YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30181051, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.48
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIISRNNF HSGIGSRFLI NTVTVADIWR KGIFAICLLV AAFMLSASLH AKDLPDFTDL  60
   61 VEKHGQAVVN ISTVQTQQID ANHFFPGIPN IPEDSPFYEF FRRHMQPFSG PRKYESRSLG 120
  121 SGFIISKDGY ILTNAHVVES ANEITVRLTD KREFGAKVIG TDRKTDIALL KIDADDLPVV 180
  181 TQGSPDQLKV GEWVIAIGAP FGFENTVTAG IVSAKGRSLA QENYVPFIQT DVAINPGNSG 240
  241 GPLFNMKGEV VGINSQIYSR TGGFMGLSFA IPIDVAMEIT SQLKAYGKVS RGKIGVMIQE 300
  301 MTDELAESFN LDKSRGALVV SVEKDGPADK AGIKIRDVIL RFDGKGIDTS SDLPRIVGNT 360
  361 KPDARVSVEV WRNGSVKKLT VTVGEMPGDD SSTTVQKQSK SGDATSRLGL ALRELSASQK 420
  421 NELGIDSGLL VEEVYDGIAS SAGIRPGDVI LGFNNQDIKS IQQFNKLLDD AKKGRNIALL 480
  481 IKRGDITTFI TIKING

Type	Start	End	Confidence
Cytoplasmic	1	27	0.45
Transmembrane Helix	28	51	0.40
Non-Cytoplasmic	52	496	0.98