YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30180890, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.89
Transmembrane Helix	6	26	0.92
Cytoplasmic	27	32	0.81
Transmembrane Helix	33	54	0.92
Non-Cytoplasmic	55	80	0.86
Transmembrane Helix	81	102	0.93
Cytoplasmic	103	112	0.73
Transmembrane Helix	113	130	0.91
Non-Cytoplasmic	131	135	0.54
Transmembrane Helix	136	156	0.80
Cytoplasmic	157	166	0.68
Transmembrane Helix	167	189	0.92
Non-Cytoplasmic	190	207	0.71
Transmembrane Helix	208	228	0.82
Cytoplasmic	229	244	0.49
Transmembrane Helix	245	265	0.76
Non-Cytoplasmic	266	273	0.59
Transmembrane Helix	274	295	0.95
Cytoplasmic	296	306	0.55
Transmembrane Helix	307	331	0.83
Non-Cytoplasmic	332	335	0.48
Transmembrane Helix	336	355	0.60
Cytoplasmic	356	364	0.91
Transmembrane Helix	365	389	0.86
Non-Cytoplasmic	390	413	0.93
Transmembrane Helix	414	436	0.88
Cytoplasmic	437	458	0.89
Transmembrane Helix	459	482	0.85
Non-Cytoplasmic	483	501	0.90
Transmembrane Helix	502	525	0.88
Cytoplasmic	526	577	0.94
Transmembrane Helix	578	598	0.89
Non-Cytoplasmic	599	605	0.84
Transmembrane Helix	606	628	0.88
Cytoplasmic	629	634	0.88
Transmembrane Helix	635	655	0.94
Non-Cytoplasmic	656	661	0.75
Transmembrane Helix	662	682	0.93
Cytoplasmic	683	701	0.95
Transmembrane Helix	702	723	0.90
Non-Cytoplasmic	724	761	0.94
Transmembrane Helix	762	780	0.95
Cytoplasmic	781	818	0.97
Transmembrane Helix	819	842	0.86
Non-Cytoplasmic	843	848	0.84
Transmembrane Helix	849	869	0.92
Cytoplasmic	870	884	0.85
Transmembrane Helix	885	905	0.93
Non-Cytoplasmic	906	927	0.88
Transmembrane Helix	928	951	0.92
Cytoplasmic	952	972	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSEDLLYFL IALPFAGSAL AAILPANARN TEAWLAGSVM IAAFIIAAGL YPFISEGEAL  60
   61 RNEIEWLPGS GLNFTLRMDG FAWMFSMLIT GIGFLVVLYA RYYMSPRDPV PRFFSFLLAF 120
  121 AGAMQGMVIA GNLILLAIFW ELTSIFSFLL IGYWHHNAAA REGARMSLII TGTGGLCLLA 180
  181 GLILVGHIVG SYDLDSVLAA GDRIREHALY VPALVLILLG ALTKSAQFPF HFWLPNAMTA 240
  241 PTPVSAYLHS ATMVKAGVFL LTRLWPVLSG TDEWFFILGL AGMSTLLLSA YFAIFQQDLK 300
  301 GLLAYSTISH LGLITTLLSL GSPLAAVAAI FHMMNHATFK ASLFMAAGII DHEAGTRDMR 360
  361 KLSGLFSYMP ITATLAMVAS AAMAGVPLLN GFLSKEMFFA ETLGQHSGSV LDGMLPYVAT 420
  421 IAGAFAVTYS VRFIHTVFFG EKARDLPREP HEPPHWMRLP IEFLVLACLI VGIIPGMTVG 480
  481 PYLHTAVTSV LGEHTPQYSL AIWHGINTPL IMSVTALIGG VLLYLALKNY LARCEDGPPG 540
  541 LSHLKGQHIF DRMLVTLSWR WARWLEESFG THRLQPQLFL VMLTALIAGS WPFFGAGIDF 600
  601 SSPILTGIDP VFAILWGIGV ACALGAAYQA KYHRLAALIL MGGAGLVTCI TFVWFSAPDL 660
  661 AVTQLLVEIV TTVLILLGLR WLPKRVAQID NASTPVAWTR RFRDLMLAVG CGGGMALIAY 720
  721 KAMTNAPLSD SIARFFLERA HSEGGGNNVV NVILVDFRGF DTFGEITVLG IVALTVYALL 780
  781 RRFRPAPDSI DIPEQQRRQN AFDDNHPDRS IGETVHDYLM VPSIVMQWMF PFIILLAVYF 840
  841 FLRGHDLPGG GFAAGITLAI GILLQYLASG TRWVEDRLYI RPVRWIGSGL LLAVLTGVGS 900
  901 WLFGFPFLTS HFDHLEIPLI GELPVATALF FDLGVLLLVV GATALMLIAI AHQSLRSYRT 960
  961 RSADTEKTGE ED