YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30248801, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKEKNTSE LLQLIVVQNT NAVISVDEIK NSLHERGFAV LLAIATLPIC LPVPAPPGYT  60
   61 TVFAIPLFIF SIQMICGMKA PWIPEWLTKK TIKRGTLDKL ITKAAPWLRK IESHMHPRLT 120
  121 YISVHAWERI IGLFSFIFSI SIALPVPLIN FLPGLGILIM SLGLLSKDGL TIIAGMIVGT 180
  181 TGVGIALIVV ALLWMGVPIP FVQSTD

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	55	0.92
Non-Cytoplasmic	56	61	0.75
Transmembrane Helix	62	83	0.90
Cytoplasmic	84	129	0.88
Transmembrane Helix	130	159	0.77
Non-Cytoplasmic	160	171	0.48
Transmembrane Helix	172	197	0.87
Cytoplasmic	198	206	0.54