YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30248772, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.91
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	41	0.83
Transmembrane Helix	42	62	0.91
Non-Cytoplasmic	63	94	0.91
Transmembrane Helix	95	114	0.92
Cytoplasmic	115	121	0.89
Transmembrane Helix	122	143	0.92
Non-Cytoplasmic	144	175	0.96
Transmembrane Helix	176	197	0.92
Cytoplasmic	198	209	0.84
Transmembrane Helix	210	231	0.92
Non-Cytoplasmic	232	246	0.90
Transmembrane Helix	247	264	0.94
Cytoplasmic	265	273	0.85
Transmembrane Helix	274	293	0.95
Non-Cytoplasmic	294	310	0.82
Transmembrane Helix	311	331	0.95
Cytoplasmic	332	350	0.94
Transmembrane Helix	351	375	0.89
Non-Cytoplasmic	376	391	0.89
Transmembrane Helix	392	411	0.94
Cytoplasmic	412	422	0.84
Transmembrane Helix	423	443	0.95
Non-Cytoplasmic	444	449	0.85
Transmembrane Helix	450	470	0.93
Cytoplasmic	471	490	0.92
Transmembrane Helix	491	511	0.93
Non-Cytoplasmic	512	616	0.97
Transmembrane Helix	617	636	0.93
Cytoplasmic	637	683	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPELGNFAL ILAMLLALVQ GTLPIIGAAR GIPSWIALAR PVTQGHFVFI AIAFGCLAYS  60
   61 FVNNDFSVLN VASNSNSDLP VHFRFAATWG SHEGSLLLWV TMLAGWSVAV SVFSRQLPDD 120
  121 MVARVLGVLG LVSAGFLLFL LFTSNPFDRL LPAAIEGNDL NPLLQDPGMV MHPPMLYMGY 180
  181 VGFSVAFAFA IAALLNGQLD AAWARWSRPW TVVAWIFLTI GIMGGSWWAY YELGWGGWWF 240
  241 WDPVENASFM PWLVGTALIH SLAVTEKRGS FKSWTVLLAI TAFSLSLLGT FLVRSGVLTS 300
  301 VHAFATDPAR GIFILVYLSL VVGCSLTLFA WRASKVGLGG NFEIVSRETT LLANNVLLLV 360
  361 AAGSVLLGTL YPLLIDALDL GKISVGPPYF EAVFVPLMAP AIFLIGLGPI ARWKKASLPA 420
  421 LAVLMRWAFV VSLVAAGIMP FIMGEWKPMV SFGLLLAFWV IASIFVSISH RLRNGGEGGL 480
  481 FTRLAKQPRG YYGMHCAHLG IAVFIIGVTL VNGYETEKDV RMEVGSTVTL KEYTFQFNGT 540
  541 KSVTGPNYNA SQGQVEVFRE GKKVSELQPE KRTYTASGMP MTEAAVDMGL LRDLYVALGE 600
  601 PLENGAWIVR VYHKPFVNWI WLGCMLMALG GALAASDRRY RLAIGKKSRN KAASGPVAPE 660
  661 TADIPAGSMV TNSVILSEEG GKV