YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30180040, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLDNEADHH SENKAEAPGI QPAVTRNVAD ISPQIAQCAV EWLVELQAAD HDEATHEAFQ  60
   61 RWLAAHPDHK LAWQHIETVN TRFNGLTSPL GSAVAKAVLT PRRSLKRRQI IKTLVVILFA 120
  121 GSTGWWADEK IPWRAWTADE RTHIGQRRNI TLADGSRVVL NTDTAINIRF TANERRLQLV 180
  181 RGEILVTTNQ DSASIVRPFI VEIAQSELRP LGTRFTIHQQ TTSNRLSVFE GAVEIRLRQD 240
  241 INYRHIVQAG EQVDFSNQGI HEIHPADDTS TAWSNGMIIA SSMRLADFLA ELDRHRPGKL 300
  301 NCDPAVADLR VSGTYPLTDP EDILDALQTT LPVKIQYFTR YWVTVRPAS

Type	Start	End	Confidence
Cytoplasmic	1	109	0.66
Transmembrane Helix	110	127	0.67
Non-Cytoplasmic	128	349	0.97