YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30179962, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAIGYVVV IVSVFGGFAM AGGHLGSLFQ PVELIMIAGA AVGAFFVGNS GKAIKATFKA  60
   61 LPYIFRDANY TKSVYMELMT LLYEILGKIR KEGLMSIEAD VDDPGKSPLF GKYPKILSDH 120
  121 HATEFITDYL RLMVGGNLNP LEIENLMDGE IETHHQEGEV PVHVISKMGD ALPAFGIVAA 180
  181 VMGVVHTMES VGIPPAELGK LIAAALVGTF LGILLAYGFI GPLANRLEQR LHESGKLLEC 240
  241 VKVTLLANLN GYAPALAVEF GRKVLFSTER PSFAELEKHI KQSKAK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.76
Transmembrane Helix	7	26	0.93
Non-Cytoplasmic	27	33	0.71
Transmembrane Helix	34	53	0.90
Cytoplasmic	54	170	0.97
Transmembrane Helix	171	190	0.87
Non-Cytoplasmic	191	200	0.75
Transmembrane Helix	201	221	0.95
Cytoplasmic	222	286	0.90