YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|294845
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDGDGKGR VATAPGGGYG YGYGYGGYEG PEDRKWWPWL VPTVIVACIA VFVVEMYENN  60
   61 CPKHGSQLGG CVAGFLRRFS FQPLRENPLL GPSSSTLEKM GALDWNKIVH QDQGWRLISC 120
  121 IWLHAGLIHL VVNMLSLLFI GIRLEQQFGF VRIGAIYLLS GFGGSVLSAL FLRNNYISVG 180
  181 ASGALFGLLG SMLSELLMNW TIYSNKAAAI ITLLFIIALN LAIGILPHVD NFAHIGGFAT 240
  241 GFLLGFVLLA RPQFSWMERH ELPQTNQPPK YKAYQYILWV VALVLLLVGF VISLVMLFKG 300
  301 KNGNDGCHWC HYLNCVPTSK WKCNT

Type	Start	End	Confidence
Cytoplasmic	1	35	0.87
Transmembrane Helix	36	57	0.86
Non-Cytoplasmic	58	119	0.91
Transmembrane Helix	120	142	0.90
Cytoplasmic	143	148	0.86
Transmembrane Helix	149	172	0.88
Non-Cytoplasmic	173	176	0.84
Transmembrane Helix	177	198	0.88
Cytoplasmic	199	206	0.73
Transmembrane Helix	207	226	0.94
Non-Cytoplasmic	227	232	0.73
Transmembrane Helix	233	255	0.88
Cytoplasmic	256	275	0.90
Transmembrane Helix	276	298	0.92
Non-Cytoplasmic	299	325	0.94