YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72574
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.46
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFARHFLP LSLRVRFLLA TAGVVLVLSL AYGIVALVGY SVSFDKTTFR LLRGESNLFY  60
   61 TLAKWENNKI SVELPENLRM QSPTMTLIYD ETGKLLWTQR NIPWLIKSIQ PEWLKTNGFH 120
  121 EIETNVDATS TLLSEDHSAQ EKLKEVREDD DDAEMHSVAV NNIYPATARM PQLTIVVVDT 180
  181 IPIELKRSYM VWSWFVYVLA ANLLLVIPLL WIAAWWSLRP IEALAREVRE LEDHHREMLN 240
  241 PETTRELTSL VRNLNQLLKS ERERYNKYRT TLTDLTHSLK TALAVLQSTL RSLRNEKMSV 300
  301 SKAEPVMLEQ ISRISQQIGY YLHRASMRGS GVLLSRELHP VAPLLDNLIS ALNKVYQRKG 360
  361 VNISMDISPE ISFVGEQNDF VEVMGNVLDN ACKYCLEFVE ISARQTDDHL HIFVEDDGPG 420
  421 IPHSKRSLVF DRGQRADTLR PGQGVGLAVA REITEQYAGQ IIASDSLLGG ARMEVVFGRQ 480
  481 HPTQKEE

Type	Start	End	Confidence
Signal Peptide	1	33	0.48
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	190	0.70
Transmembrane Helix	191	216	0.84
Cytoplasmic	217	487	0.63