YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3851606
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSFLMDSL LSDRPNLSQK KEKLGSPVGS PTAAAAVAAA AMLPSIPMLP YPASYVGSYL  60
   61 FSLGIQQQQQ QQQQQQQQAA AAAAAAAAAA ALQQHPHVSS SPGSLYHPYA QLFASKRKSS 120
  121 GFSNYEGCYP SPPLSANPNS QQLPPIHNLY GSPVVGGLPL PEPGSFCTSP SASSSASLDY 180
  181 TNNFDEPQGK RFKHESSCSP NSSPLKNHSS GGPVEITPLI NDYADSSKRI RTAFTSTQLL 240
  241 ELEREFSHNA YLSRLRRIEI ANRLRLSEKQ VKIWFQNRRV KQKKGGSESP TFNLSTNSNG 300
  301 SPQASPVSPQ VKVHELKVEA

Type	Start	End	Confidence
Cytoplasmic	1	27	0.48
Transmembrane Helix	28	42	0.29
Non-Cytoplasmic	43	320	0.92