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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|539794
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.60
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCPRAARAPA TLLLALGAVL WPAAGAWELT ILHTNDVHSR LEQTSDDSTK CLNASLCVGG  60
   61 VARLFTKVQQ IRKEEPNVLF LDAGDQYQGT IWFTVYKGLE VAHFMNILGY DAMALGNHEF 120
  121 DNGVEGLIDP LLRNVKFPIL SANIKARGPL AHQISGLFLP SKVLSVGGEV VGIVGYTSKE 180
  181 TPFLSNPGTN LVFEDEISAL QPEVDKLKTL NVNKIIALGH SGFEMDKLIA QKVRGVDIVV 240
  241 GGHSNTFLYT GNPPSKEVPA GKYPFIVTAD DGRQVPVVQA YAFGKYLGYL KVEFDDKGNV 300
  301 ITSYGNPILL NSSIPEDATI KADINQWRIK LDNYSTQELG RTIVYLDGST QTCRFRECNM 360
  361 GNLICDAMIN NNLRHPDEMF WNHVSMCIVN GGGIRSPIDE KNNGTITWEN LAAVLPFGGT 420
  421 FDLVQLKGST LKKAFEHSVH RYGQSTGEFL QVGGIHVVYD INRKPWNRVV QLEVLCTKCR 480
  481 VPIYEPLEMD KVYKVTLPSY LANGGDGFQM IKDELLKHDS GDQDISVVSE YISKMKVVYP 540
  541 AVEGRIKFSA ASHYQGSFPL VILSLSAVIF VLYQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle