YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCKLR-17D3-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	113	0.78
Transmembrane Helix	114	137	0.87
Cytoplasmic	138	147	0.90
Transmembrane Helix	148	170	0.89
Non-Cytoplasmic	171	188	0.80
Transmembrane Helix	189	212	0.83
Cytoplasmic	213	227	0.94
Transmembrane Helix	228	249	0.91
Non-Cytoplasmic	250	277	0.93
Transmembrane Helix	278	299	0.91
Cytoplasmic	300	430	0.97
Transmembrane Helix	431	449	0.91
Non-Cytoplasmic	450	468	0.75
Transmembrane Helix	469	490	0.90
Cytoplasmic	491	509	0.83
Transmembrane Helix	510	528	0.91
Non-Cytoplasmic	529	535	0.66
Transmembrane Helix	536	557	0.76
Cytoplasmic	558	584	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNYEEGDAD QAAMAAAAAY RALLDYYANA PSAAGHIVSL NVAPYNGTGN GGTVSLAGNA  60
   61 TSSYGDDDRD GYMDTEPSDL VTELAFSLGT SSSPSPSSTP ASSSSTSTGM PVWLIPSYSM 120
  121 ILLFAVLGNL LVISTLVQNR RMRTITNVFL LNLAISDMLL GVLCMPVTLV GTLLRNFIFG 180
  181 EFLCKLFQFS QAASVAVSSW TLVAISCERY YAICHPLRSR SWQTISHAYK IIGFIWLGGI 240
  241 LCMTPIAVFS QLIPTSRPGY CKCREFWPDQ GYELFYNILL DFLLLVLPLL VLCVAYILIT 300
  301 RTLYVGMAKD SGRILQQSLP VSATTAGGSA PNPGTSSSSN CILVLTATAV YNENSNNNNG 360
  361 NSEGSAGGGS TNMATTTLTT RPTAPTVITT TTTTTVTLAK TSSPSIRVHD AALRRSNEAK 420
  421 TLESKKRVVK MLFVLVLEFF ICWTPLYVIN TMVMLIGPVV YEYVDYTAIS FLQLLAYSSS 480
  481 CCNPITYCFM NASFRRAFVD TFKGLPWRRG AGASGGVGGA AGGGLSASQA GAGPGAYASA 540
  541 NTNISLNPGL AMGMGTWRSR SRHEFLNAVV TTNSAAAAVN SPQL