YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7491658
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVQHRGRRR RSKSIVGRAA QNAVLRSKEK TWIVPLILLT LLVGWYFVNP NGYIKYGIFL  60
   61 SYPIPGTNPA QYGKGRLDIA FCLFYALFFT FCREFIMQEI IARIGRHFNI RAPAKLRRFE 120
  121 EQAYTCLYFT VMGSWGLYVM KQTPMWFFNT DAFWEEYPHF YHVGSFKAFY LIEAAYWIQQ 180
  181 ALVLILQLEK PRKDFKELVV HHIITLLLIG LSYYFHFTWI GLAVFITMDT SDIWLALSKC 240
  241 LNYVNTVIVY PIFVIFVFVW IYMRHYLNFK IMWAVWGTMR TINSFDLDWA AEQYKCWISR 300
  301 DVTLILLTAL QLVNIYWLIL ILRIGYRAFT TNDTHDERSE DEDEEVSDEK SSAKKND

Type	Start	End	Confidence
Cytoplasmic	1	30	0.99
Transmembrane Helix	31	49	0.93
Non-Cytoplasmic	50	76	0.88
Transmembrane Helix	77	97	0.90
Cytoplasmic	98	122	0.90
Transmembrane Helix	123	140	0.92
Non-Cytoplasmic	141	165	0.82
Transmembrane Helix	166	186	0.81
Cytoplasmic	187	197	0.90
Transmembrane Helix	198	220	0.87
Non-Cytoplasmic	221	242	0.82
Transmembrane Helix	243	263	0.91
Cytoplasmic	264	301	0.75
Transmembrane Helix	302	322	0.78
Non-Cytoplasmic	323	357	0.60