YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAR2_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIMSDIIAQ RTILLIADFS SIIGCSLVLI GFWRLKLLRN HITKIISLFC ATSLFKDVIS  60
   61 TIITLLYKPD QTESGFPCYL HAIVITFGSL ACWLWTLMLS FSIYNLIVRR EPEPERFEKF 120
  121 YFCLCYGLPL ISTIVMLSTH IIQPVGGWCW IGDNYDGYRF GLFYGPFFFI WGTSAILVGL 180
  181 TSKYTYSVIR SSVSDNKDKH MTYQFKLINY IVVFLVCWVF AIVNRILNGL NQFPTVPNVL 240
  241 HTYFSVSHGF YASITFIYNN PLMWRYFGAK FLLIFSKFGL FVQAQQRLEL NKNNNNPSPI 300
  301 MRSKNALDNG ADSSVVELPC LSKADSLSLD AENNIETPKE NENQNHHHHH HHHHHHNHYN 360
  361 NNNNNNNINN KNDMI

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.80
Transmembrane Helix	13	33	0.94
Cytoplasmic	34	44	0.72
Transmembrane Helix	45	66	0.83
Non-Cytoplasmic	67	78	0.91
Transmembrane Helix	79	104	0.83
Cytoplasmic	105	119	0.90
Transmembrane Helix	120	142	0.94
Non-Cytoplasmic	143	162	0.92
Transmembrane Helix	163	186	0.86
Cytoplasmic	187	206	0.91
Transmembrane Helix	207	227	0.91
Non-Cytoplasmic	228	239	0.91
Transmembrane Helix	240	262	0.71
Cytoplasmic	263	375	0.72