YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLD1_HELAN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSPSIEVLN SIADGKKYIT SKELKKHNNP NDLWISILGK VYNVTEWAKE HPGGDAPLIN  60
   61 LAGQDVTDAF IAFHPGTAWK HLDKLFTGYH LKDYQVSDIS RDYRKLASEF AKAGMFEKKG 120
  121 HGVIYSLCFV SLLLSACVYG VLYSGSFWIH MLSGAILGLA WMQIAYLGHD AGHYQMMATR 180
  181 GWNKFAGIFI GNCITGISIA WWKWTHNAHH IACNSLDYDP DLQHLPMLAV SSKLFNSITS 240
  241 VFYGRQLTFD PLARFFVSYQ HYLYYPIMCV ARVNLYLQTI LLLISKRKIP DRGLNILGTL 300
  301 IFWTWFPLLV SRLPNWPERV AFVLVSFCVT GIQHIQFTLN HFSGDVYVGP PKGDNWFEKQ 360
  361 TRGTIDIACS SWMDWFFGGL QFQLEHHLFP RLPRCHLRSI SPICRELCKK YNLPYVSLSF 420
  421 YDANVTTLKT LRTAALQARD LTNPAPQNLA WEAFNTHG

Type	Start	End	Confidence
Cytoplasmic	1	121	0.99
Transmembrane Helix	122	142	0.96
Non-Cytoplasmic	143	147	0.79
Transmembrane Helix	148	168	0.92
Cytoplasmic	169	180	0.90
Transmembrane Helix	181	202	0.90
Non-Cytoplasmic	203	261	0.91
Transmembrane Helix	262	284	0.84
Cytoplasmic	285	292	0.84
Transmembrane Helix	293	311	0.88
Non-Cytoplasmic	312	458	0.51