YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11353850, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFFKRLFD IVASASGLIF LSPVFLILIY LIRKNLGSPV FFFQERPGKD GKPFKMVKFR  60
   61 SMRDALDSDG IPLPDGERLT PFGKKLRAAS LDELPELWNI LKGEMSLVGP RPLLMQYLPL 120
  121 YDNFQNRRHE MKPGITGWAQ VNGRNALSWD EKFACDVWYI DHFSLCLDIK ILLLTVKKVL 180
  181 IKEGISAQGE ATMPPFTGKR KLAVVGAGGH GKVVADLAAA LGRYREIVFL DDRAQGSVNG 240
  241 FSVIGTTLLL ENSLSPEQYD VAVAVGNNRI RRQIAEKAAA LGFALPVLVH PDATVSPSAT 300
  301 VGQGSVVMAK AVVQAGSVLK DGVIVNTAAT VDHDCLLNAF VHISPGAHLS GNTHIGEESW 360
  361 IGTGACSRQQ IRIGSRATIG AGAVVVRDVS DGMTVAGNPA KPLPRKNPET STA

Type	Start	End	Confidence
Cytoplasmic	1	10	0.81
Transmembrane Helix	11	32	0.91
Non-Cytoplasmic	33	413	0.99