YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12698670, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHQDPYSVQ ATAAIAAAIT FLILFTIFGN ALVILAVLTS RSLRAPQNLF LVSLAAADIL  60
   61 VATLIIPFSL ANELLGYWYF RRTWCEVYLA LDVLFCTSSI VHLCAISLDR YWAVSRALEY 120
  121 NSKRTPRRIK CIILTVWLIA AVISLPPLIY KGDQGPQPRG RPQCKLNQEA WYILASSIGS 180
  181 FFAPCLIMIL VYLRIYLIAK RSNRRGPRAK GGPGQGESKQ PRPDHGGALA SAKLPALASV 240
  241 ASAREVNGHS KSTGEKEEGE TPEDTGTRAL PPSWAALPNS GQGQKEGVCG ASPEDEAEEE 300
  301 EEEEEECEPQ AVPVSPASAC SPPLQQPQGS RVLATLRGQV LLGRGVGAIG GQWWRRRAQL 360
  361 TREKRFTFVL AVVIGVFVLC WFPFFFSYSL GAICPKHCKV PHGLFQFFFW IGYCNSSLNP 420
  421 VIYTIFNQDF RRAFRRILCR PWTQTAW

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.91
Transmembrane Helix	14	38	0.90
Cytoplasmic	39	48	0.88
Transmembrane Helix	49	71	0.92
Non-Cytoplasmic	72	87	0.93
Transmembrane Helix	88	108	0.93
Cytoplasmic	109	128	0.88
Transmembrane Helix	129	150	0.91
Non-Cytoplasmic	151	172	0.95
Transmembrane Helix	173	198	0.84
Cytoplasmic	199	365	0.99
Transmembrane Helix	366	385	0.98
Non-Cytoplasmic	386	406	0.87
Transmembrane Helix	407	427	0.93
Cytoplasmic	428	447	0.96