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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14090150, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNKKITLS VLMFSGIVLT LAVLVSCTGI DITNTKSKRQ LSNQTNFSNE NSKVANELKN  60
   61 NAKTLGNSNT TNKEALGLQK STKTATRQEQ SSGLQTQDAK NTKSKELAES QVGTSVNNEE 120
  121 KNFRILEAKN TKNTKDNPSA KSQNLDTSQD HLKNSQKSNI SNIKNEQSKK LQTLNNKEEH 180
  181 SANLQTQNIL ESENTQQDLD KPNNSNKEEK ELKNVLSFNK QEAVKDGSFE FYFKEIVSKL 240
  241 KESKINYDKK VDEITLDKTF ADFSFEQYIE KIKDLFKMAS TIKDTYQTNK IFLTNDEYIK 300
  301 KNNESNLKDK KWFSNNFENE IYKYFLEKLD ALVEIQALHK QYLEKNEIIK TGEIVDKVAA 360
  361 FIKSRELKSK AKGLLFSKDQ SAKITQLINH ILSRYFPEAP ENLELSKAKM GLINELKPEI 420
  421 YVEKEGVEIA YPTLQDAISN AQDGQKIFLN KNLKLDKSIV VDKNITIFAK SNVTITRKDS 480
  481 SKSFTMFIVQ KGALTFEIAE PSSQSINLNG LGTSFKDESS LVKIEKNAKL VAKTGTAFIN 540
  541 SKSFSKYGSV FENYGSVVIE GAKIWNNVSE SGGIIRNHVG SSLTFKNGEI RDNISTGDKG 600
  601 IIYSQGNIAI SGGSIDGNKS FRSSLINLEK TNINFNSGSI VNNASVKSIL FEIDNSKIQI 660
  661 SNNALINPFG SSAIFLKNNS TMHLAGSLEK IKKEASEQRI EVLVDLPTQA KLISPKNIIS 720
  721 LDNYQKLSSA IFKIFSVKNI NDFKHVPLVW NTKEKFFKLW PDTKLFVNFY KTLKQNHDLI 780
  781 LQSGDFESTE KIIKDELDFY FRPTAAVKKL ILTQLVRTIP KYHKFWEAFE YPNFDLQKWY 840
  841 ETINELIRLD FPYLFDIAYP EFVENGKMLP KPEYIHTNVV NPVLEHFRNE DVARIWAKIH 900
  901 EYLVDKPQYN KGYLIDNFRF KDQILGYLTE TETINVIYLP ENMDSSSRVQ DKGIDLREVF 960
  961 QNPKNWSESN QRQNTYDKEG IFIKRGNEYK EYISLKTAID EAKENETIII NENVEIESSL1020
 1021 TINKKINFTT FKNVNITRKY PNHAYAILEV AKGGDLTLEI LNPAKHSLGI NGLGIDVKNS1080
 1081 ALVNVKQGGK LSAKKGVSFV NAYSSTSYFA VFLNSGKILI DGAKITDNYS KSASVLRNEG1140
 1141 GEFEFLDGVI ANNRAKSDVA IIYNHAGKLK LMGGKILYNQ TEAKGLIWSN DDTWLNASLD1200
 1201 ANFSLDRSAI QMFNNAKLHL LKDVFFGPEF TKHIILSNNS TLEVDDELKK HFVKDSRLIN1260
 1261 VVIRDFAHEK FVLKVNHEKS VDLAGKIFDH FNFVDDQNSK AVILEAAHLE SKFKIINKDS1320
 1321 FTVLKNLMIF NAKEITKHVA NKDEAALGAF MKKISTNFHS PFLVKQLLKH PPIEIFGADE1380
 1381 FEVLDRKTKT LESFANSLWS MSEKSFIFAG TATAMSIGFG VAAFFVGPAF IPSAIGSAIT1440
 1441 ATTLFVQAGV IRSQYYQLVN SKDWNKIKHI TYSELANNGK AAITAVGATT AMFWKILAVV1500
 1501 KAFQAVKLVL ELGAAATSWS NPLISILVAA ADLIITGVSF LNGVVF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle