YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28881185, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDWENSSP SNRASRPPVS RVNTASSPNK PFSPSLHLTV RFSASLPDLH LDIPSPNRTT  60
   61 IVALKHRIRE RLLSSSKDSK DETTVKAARS RLRFIHAGKI LPDSAIVSSV LRPPPPPPMI 120
  121 MDTKGKGKAV DRQQQQQQQR VYVNCSIGDE LTDEELATEA AAAAFVPVPV GSVDSNLSGT 180
  181 GSGAGGGKTS RTTGLQPSSS SSSTGESRSR INASAGQATT TTTTTDRNHP RGFDRFLSAG 240
  241 FTPAEVNQLR LQFTSIQASR FTPDTMPSPD TLRSMEDAWI DNNHGGVGGP GMVESDDGSG 300
  301 MVPEPIGAET DGFNGMVDTL VKGMFIGFVF PLGAIAWLLR EEGMLSKRWR VSIAFGVVFG 360
  361 FGIGLLRVFS SDQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	319	0.88
Transmembrane Helix	320	339	0.92
Cytoplasmic	340	348	0.84
Transmembrane Helix	349	369	0.93
Non-Cytoplasmic	370	373	0.75