YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1082371
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.90
Transmembrane Helix	28	44	0.58
Non-Cytoplasmic	45	67	0.60
Transmembrane Helix	68	87	0.65
Cytoplasmic	88	94	0.71
Transmembrane Helix	95	117	0.88
Non-Cytoplasmic	118	123	0.76
Transmembrane Helix	124	144	0.86
Cytoplasmic	145	153	0.88
Transmembrane Helix	154	176	0.89
Non-Cytoplasmic	177	183	0.79
Transmembrane Helix	184	203	0.95
Cytoplasmic	204	269	0.98
Transmembrane Helix	270	290	0.93
Non-Cytoplasmic	291	307	0.89
Transmembrane Helix	308	327	0.94
Cytoplasmic	328	336	0.75
Transmembrane Helix	337	355	0.95
Non-Cytoplasmic	356	361	0.79
Transmembrane Helix	362	385	0.83
Cytoplasmic	386	394	0.83
Transmembrane Helix	395	418	0.88
Non-Cytoplasmic	419	433	0.89
Transmembrane Helix	434	455	0.91
Cytoplasmic	456	590	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPSSPAVEK QVPVEPGPDP ELRSWRRLVC YLCFYGFMAQ IRPGESFITP YLLGPDKNFT  60
   61 RDEVTNEITP VLSYSYLAVL VPVFLLTDYL RYTPVLLLQG LSFVSVWLLL LLGHSVAHMQ 120
  121 LMELFYSVTM AARIAYSSYI FSLVRPARYQ RVAGYSRAAV LLGVFTSSVL GQLLVTVGRV 180
  181 SFSTLNYISL AFLTFSVVLA LFLKRPKRSL FFNRDDRGRC ETSASELERM NPGPGGKLGH 240
  241 ALRVACGDSV LARMLRELGD SLRRPQLPLW SLWWVFNSAG YYLVVYYVHI LWNEVDPTTN 300
  301 SARVYNGAAD AASTLLGAIT SFAAGFVKIR WARWSKLLIA GVTATQAGLV FLLAHTRHPS 360
  361 SIWLCYAAFV LFRGSYQFLV PIATFQIASS LSKELCALVF GVNTFFATIV KTIITFIVSD 420
  421 VRGLGLPVRK QFQLYSVYFL ILSIIYFLGA MLDGLRHCQR GHHPRQPPAQ GLRSAAEEKA 480
  481 AQALSVQDKA SEACSQPRAR RFPQKTAWGL WGQPPWSRDR ATHTCPAPAP QAAEFLSPVT 540
  541 TPSPCTLSSA QASGPEAADE TCPQLAVHPP GVSKLGLQCL PSDGVQNVNQ