YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15676978, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNAQKTLL AVCSFEVQPK DGRIQLLPYG EFRAVDGRPT DVPAWYLTEE NGHDVALLAN  60
   61 SSRNQLVVDY EHQTLYKEKN GQPAPAAGWM RWLEFTPKGM FAEVEWTDKA AAAIAAKEYR 120
  121 YISAVFSYDT KGYVSKIFHA ALTNFPALDG MDEVLAAASA QILKPETEQN PMKELLQQLF 180
  181 DLPDAGEEEL KAALSALVEA KPKDVALSAD VFAQLAEKDS RIAALTAQTA KPDLTKYAPI 240
  241 SVVQELQSKV AALTAKQEAD KGNELITAAL TSGKLLPAQK EWAKGVLKQP GGLAFLTGFI 300
  301 ENAQPVAALA GSQTGGKAPD ERVAALTAEE AAAAKMLGMS GEEFVKIKES EGK

Type	Start	End	Confidence
Signal Peptide	1	19	0.56
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	353	0.99