YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|101081, gi\|5109
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.98
Transmembrane Helix	13	35	0.91
Non-Cytoplasmic	36	74	0.95
Transmembrane Helix	75	95	0.92
Cytoplasmic	96	113	0.90
Transmembrane Helix	114	137	0.88
Non-Cytoplasmic	138	149	0.82
Transmembrane Helix	150	172	0.90
Cytoplasmic	173	209	0.97
Transmembrane Helix	210	229	0.88
Non-Cytoplasmic	230	236	0.69
Transmembrane Helix	237	256	0.68
Cytoplasmic	257	273	0.75
Transmembrane Helix	274	298	0.81
Non-Cytoplasmic	299	306	0.76
Transmembrane Helix	307	327	0.75
Cytoplasmic	328	361	0.72
Transmembrane Helix	362	381	0.41
Non-Cytoplasmic	382	395	0.57
Transmembrane Helix	396	419	0.62
Cytoplasmic	420	453	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTVKKSAP REFGGAKGAL AIMTGFPCLM YYLWACSKFN DSQFIKPESF TIAGFQNFFR  60
   61 TLGHYIYVGA YPTRYAFLVF WSFCIVQAVM YLTLPGVRTQ GLPLKHRNNE RLPYLCNAIW 120
  121 SFYTTIVILA VLHVTHVFPI TTFIDMFGPL MSVAIITAFV CTFVLYTGTL LFGDRLFDKP 180
  181 HRLSGNPIYD AFMGACLNPR LGKLLDFKMF FEVRIPWFIL FFISVGAAVR QYETYGTVSP 240
  241 QVLFVCLGHY LYANACSKGE QLIVPTWDMA YEKFGFMLIF WNMAGVPFTY SHCTLYLFSH 300
  301 DPSVYNWSTQ YTTGIYVLLL CCYYIFDTCN GQKNHFRNQI YGTEVHRKTF PQLPWLIIKN 360
  361 PTFIRCANGG TLLTSGWYRY ARKIHYTADF FQSLSWALIT GFQSPLPYFY PSFFFVVLVH 420
  421 RVSRDIKKCK AKYGADFDEY CRICPYLFIP YIF