YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126195997, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.91
Transmembrane Helix	18	38	0.90
Cytoplasmic	39	55	0.82
Transmembrane Helix	56	79	0.87
Non-Cytoplasmic	80	96	0.91
Transmembrane Helix	97	120	0.88
Cytoplasmic	121	126	0.87
Transmembrane Helix	127	148	0.94
Non-Cytoplasmic	149	183	0.96
Transmembrane Helix	184	208	0.88
Cytoplasmic	209	218	0.89
Transmembrane Helix	219	238	0.91
Non-Cytoplasmic	239	325	0.96
Transmembrane Helix	326	346	0.94
Cytoplasmic	347	359	0.91
Transmembrane Helix	360	381	0.93
Non-Cytoplasmic	382	410	0.92
Transmembrane Helix	411	432	0.90
Cytoplasmic	433	488	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGLEAIDLA RIQFAFTVSF HIIFPAITIG LASYLAVLEG LWLKTNEEVY RDLYHFWSKI  60
   61 FAVNFGMGVV SGLVMAYQFG TNWSHFSDFA GSITGPLLTY EVLTAFFLEA GFLGVMLFGW 120
  121 NRVGPGLHFF ATVMVAIGTL ISTFWILASN SWMQTPQGFE IVDGRVIPVD WLAVIFNPSF 180
  181 PYRLLHMSVA AFLATAFFVG ASAAWHLLRG RDNPAIRKML SMAMWMALIV APVQALIGDA 240
  241 HGLNTLEHQP AKIAAMEGHW DNSSGEPTPL ILFGWPDMQR EETRFKVEIP VLGSLILKHS 300
  301 LTEPIPALKD FPPEDRPNST VVFWSFRIMA GLGMLMILVG VWSLWLRWRG QDKLFNSKAF 360
  361 LRLTLLMGPS GLIAILAGWF TTEMGRQPWV VYGLMRTADA SSAQSVTQMS LTLLTFVVVY 420
  421 FSLFGVGIGY MMRLVRKGPV THEGRETNPG GAGQKRTPAR PLSAAGEGFD EEHDGHAQAA 480
  481 DRDQDKRN