YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERDL5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	50	0.89
Non-Cytoplasmic	51	70	0.85
Transmembrane Helix	71	92	0.88
Cytoplasmic	93	101	0.80
Transmembrane Helix	102	123	0.87
Non-Cytoplasmic	124	129	0.77
Transmembrane Helix	130	148	0.96
Cytoplasmic	149	158	0.78
Transmembrane Helix	159	178	0.93
Non-Cytoplasmic	179	184	0.72
Transmembrane Helix	185	204	0.95
Cytoplasmic	205	267	0.97
Transmembrane Helix	268	290	0.86
Non-Cytoplasmic	291	302	0.76
Transmembrane Helix	303	322	0.95
Cytoplasmic	323	330	0.89
Transmembrane Helix	331	352	0.94
Non-Cytoplasmic	353	364	0.82
Transmembrane Helix	365	388	0.89
Cytoplasmic	389	399	0.82
Transmembrane Helix	400	420	0.90
Non-Cytoplasmic	421	428	0.77
Transmembrane Helix	429	450	0.90
Cytoplasmic	451	470	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGEIDEANL APETSLINKE NQDSSATITT TLLLTTFVAV SGSFVFGSAI GYSSPVQSDL  60
   61 TKELNLSVAE YSLFGSILTI GAMIGAAMSG RIADMIGRRA TMGFSEMFCI LGWLAIYLSK 120
  121 VAIWLDVGRF LVGYGMGVFS FVVPVYIAEI TPKGLRGGFT TVHQLLICLG VSVTYLLGSF 180
  181 IGWRILALIG MIPCVVQMMG LFVIPESPRW LAKVGKWEEF EIALQRLRGE SADISYESNE 240
  241 IKDYTRRLTD LSEGSIVDLF QPQYAKSLVV GVGLMVLQQF GGVNGIAFYA SSIFESAGVS 300
  301 SKIGMIAMVV VQIPMTTLGV LLMDKSGRRP LLLISATGTC IGCFLVGLSF SLQFVKQLSG 360
  361 DASYLALTGV LVYTGSFSLG MGGIPWVIMS EIFPIDIKGS AGSLVTVVSW VGSWIISFTF 420
  421 NFLMNWNPAG TFYVFATVCG ATVIFVAKLV PETKGRTLEE IQYSIGYVEL