YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPT2B_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.81
Transmembrane Helix	96	117	0.77
Non-Cytoplasmic	118	137	0.63
Transmembrane Helix	138	159	0.77
Cytoplasmic	160	164	0.40
Transmembrane Helix	165	199	0.64
Non-Cytoplasmic	200	220	0.50
Transmembrane Helix	221	240	0.58
Cytoplasmic	241	360	0.73
Transmembrane Helix	361	386	0.86
Non-Cytoplasmic	387	411	0.71
Transmembrane Helix	412	439	0.79
Cytoplasmic	440	453	0.63
Transmembrane Helix	454	475	0.87
Non-Cytoplasmic	476	485	0.72
Transmembrane Helix	486	505	0.95
Cytoplasmic	506	525	0.90
Transmembrane Helix	526	546	0.93
Non-Cytoplasmic	547	552	0.63
Transmembrane Helix	553	574	0.88
Cytoplasmic	575	693	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPWPELENS QPTSEKYTVK ADGEQSAKPE KAKETEKDDT GTPITKIELV PSHSTATLIE  60
   61 EPTEVEDPWD LPELKDTGLK WSERDTKGKI LCVFQGIGKF ILLLVFLYFF VCSLDVLSSA 120
  121 FQLVGGKVAG KFFNNNSIMS NPLAGMVIGV LVTVLVQSSS TSTSIVVSMV ASSLLPVHAA 180
  181 IPIIMGANIG TSITNTIVAL MQAGDRKEFR RAFAGATVHD FFNWLSVLVL LPLEAATGYL 240
  241 ERLTNLVVES FHFKNGEEAP ELLKVITDPF TKLIIQLDKS ILNQIAMNDE SVQNKSMIKI 300
  301 WCKTFTNVTE RNVTVPSPEN CTSPSLCWTD GLYTWTIKNV TYKENIAKCQ HIFVNFNLSD 360
  361 AIVGTILLIT SLLILCTCLI LIVKLLGSVL RGQVAAVIKK TINTDFPYPF SWVTGYLAIL 420
  421 VGAGMTFIVQ SSSVFTSAMT PLIGIGVISI QRAYPLTLGA NIGTTTTAIL AALASPGSTL 480
  481 KSSLQIALCH FFFNISGIIL WYPIPFTRLP IRLAKGLGNI SSKYRWFAIV YLIVFFLLIP 540
  541 LAVFGLSLIG WPVLVGVASP IVLVILLVVV LKILQSFCPG SLPQKLRSWD FLPFWMRSLE 600
  601 PWDKLITSLT SCFQMRCCCC CRVCCRLCCG LCGCSKCCRC TKCSEDLEEG KDEPVKSPEA 660
  661 FNNLAMDKEA QDGVTKSEVD ASGTKIVSSV TAL