YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42573479, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLIPFYLN IVAFLCTVGA IALAIFHIYR HLLNYTEPTY QRYIVRIIFM VPVYAFMSFL  60
   61 SLVLPKSSIY FDSIREVYEA WVIYNFLSLC LAWVGGPGSV VLSLSGRSLK PSWSLMTCCF 120
  121 PPLTLDGRFI RRCKQGCLQF VILKPILVAV TLVLYAKGKY KDGNFNPDQA YLYLTIIYTI 180
  181 SYTVALYALV LFYMACRDLL QPFNPVPKFV IIKSVVFLTY WQGVLVFLAA KSGFIKSAEA 240
  241 AAHFQNFIIC VEMLIAAACH FYAFPYKEYA GANVGGSGSF SGSLSHAVKL NDFYHDTVHQ 300
  301 FAPTYHDYVL YNHQDGGDEG TKKYRSRTFV PTGQEMDAMR KNKPVYANKI DGVSVSSSLS 360
  361 SEASSPKSSS VTSDPARSDA VKSSLLVDAS DSLETMYDMS LIDIDLSSFP SNVPSASESG 420
  421 PR

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.65
Transmembrane Helix	7	29	0.92
Cytoplasmic	30	42	0.63
Transmembrane Helix	43	64	0.91
Non-Cytoplasmic	65	80	0.63
Transmembrane Helix	81	104	0.89
Cytoplasmic	105	136	0.71
Transmembrane Helix	137	156	0.87
Non-Cytoplasmic	157	173	0.81
Transmembrane Helix	174	195	0.92
Cytoplasmic	196	208	0.89
Transmembrane Helix	209	230	0.85
Non-Cytoplasmic	231	241	0.72
Transmembrane Helix	242	264	0.83
Cytoplasmic	265	422	0.84