YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|292, gi\|89501...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRTLTCTLT AGGSAASSRL SMEGPASPAR APGALPYYVA FSQLLGLIVV AMTGAWLGMY  60
   61 RGGIAWESAL QFNVHPLCMI IGLVFLQGDA LLVYRVFRNE AKRTTKVLHG LLHVFAFVIA 120
  121 LVGLVAVFEH HRKKGYADLY SLHSWCGILV FALFFAQWLV GFSFFLFPGA SFSLRSRYRP 180
  181 QHVFFGAAIF LLSVATALLG LKEALLFELG TKYSMFEPEG VLANVLGLLL ATFATVILYI 240
  241 LTRADWKRPL QAEEQALSMD FKTLTEGDSP SSQ

Type	Start	End	Confidence
Cytoplasmic	1	36	0.91
Transmembrane Helix	37	58	0.91
Non-Cytoplasmic	59	73	0.81
Transmembrane Helix	74	97	0.83
Cytoplasmic	98	106	0.93
Transmembrane Helix	107	128	0.92
Non-Cytoplasmic	129	144	0.84
Transmembrane Helix	145	167	0.88
Cytoplasmic	168	181	0.80
Transmembrane Helix	182	201	0.95
Non-Cytoplasmic	202	220	0.88
Transmembrane Helix	221	242	0.94
Cytoplasmic	243	273	0.97