YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1086252, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQSKLAGTA TSYDRHLFLC YKSHETCPAR LEASDSDLLP KSFSAALKAR KDDIKIKTLL  60
   61 TICEVRDDME VSEGDILIFP EMIKYRDLKE SDVDAFVDDV LVNGNPWSSG LQESLSGSYV 120
  121 FVCAHNLRDR RCGVCGPILI EEFSKLIESK GLKDKVRVAA CSHIGGHKYA GNVIIFSSGK 180
  181 DGDIVGHWYG YVTPSDVPAL LDEHIGEGKV IERLWRGQMG QYEKVTDKVD EQKVPEVTNE 240
  241 EKKPLENGSQ ESSVTSFSCC QGAAGVSCCR DASAEQEENK KGQGTVSNWF GKWEQREILA 300
  301 RVGVVGAVAV VAVAYGFYKK SR

Type	Start	End	Confidence
Non-Cytoplasmic	1	297	0.70
Transmembrane Helix	298	318	0.90
Cytoplasmic	319	322	0.60