YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|558181, gi\|10...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKKRARRR KDEYTEPGAQ KVDKPSKDEK NVAKWLKKNV KTKKTKFLSH IVEYFTSSKA  60
   61 IDALMKSKFT EGSNPLFTTR EQVIEFLDVM LEHKFFHRAK KVPVTLEEIR GKSGGDKKAD 120
  121 KEKTQDKEKD KAKDEKKDTD PEGDNGQGDG GASGNEKEKE KKEKKKRKIR LDMHPEQIFV 180
  181 DGSEAYVWIY DPIPLHYWIF GFILLLGAVG ICLFPLWPPL LRKGVYYLSI AAAGFLVFIL 240
  241 ALTIVRLIVF IIVWALTGGK LHFWIFPNLT EDVSFFASFW PLYESNYNSD PNNSSAKTDK 300
  301 KSKSKDKKKE KESDAEDTAV DADGDADGDV DAEVSTLEPE KIELIKEHDT DMEIRKRRKV 360
  361 GADDYEEDDV DEEETKRSPR IPKLERHATR DRIRRARVKI TR

Type	Start	End	Confidence
Cytoplasmic	1	194	0.86
Transmembrane Helix	195	217	0.92
Non-Cytoplasmic	218	226	0.67
Transmembrane Helix	227	256	0.81
Cytoplasmic	257	402	0.65