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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|546643
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRKETFGFR KSKISRTLCG ALLGTAILAS VTGQKALAEE TSTTSTSGVN TAVVGTETGN  60
   61 PATNLPDKQD NPSSQAETSQ AQAGQKTGAM SVDVSTSELD EAAKSAQEAG VTVSQDATVD 120
  121 KGTVETSDEA NQKETEIKDD YSKQAADIQK TTEDYKAAVA RNQAETDRIT QENAAKKAQY 180
  181 EQDLAANKAE VERITNENAQ RKADYEAKLA QYQKDLAAVQ QANNDSQAAY AAAKEAYDKE 240
  241 LARVQAANAA AKKEYEEALA ANTTKNEQIK AENAAIQQRN AQAKADYEAK LAQYEKDLAA 300
  301 AQSGNATNEA DYQAKKAAYE QELARVQAAN AAAKQAYEQA LAANTAKNAQ ITAENEAIQQ 360
  361 RNAQAKANYE AKLAQYQKDL AAAQSGNAAN EADYQEKLAA YEKELARVQA ANAAAKQEYE 420
  421 QKVQEANAKN AEITEANRAI RERNAKAKTD YELKLSKYQE ELAQYKKDLA EYPAKLQAYQ 480
  481 DEQAAIKAAL EELEKHKNED WNLSEPSAQS LVYDLEPNAQ ISLVTDWKLL KASSLDESFS 540
  541 HDTEQYNKHN LQPDNLNITY LEQADDVASS VELFGNFGDK AGWTTTVSNG SEVKFASVLL 600
  601 KRGQSATATY TNLKNSYYNG KKISKVVYKY TVDPDSKFQN PTGNVWLGIF TDPTLGVFAS 660
  661 AYTGQNEKDT SIFIKNEFTF YDEDGNPIDF DNALLSVASL NREHNSIEMA KDYSGTFVKI 720
  721 SGSSIGEKNG MIYATDTLNF KKGEGGSLHT MYTRASEPGS GWDSADAPNS WYGAGAVRMS 780
  781 GPNNYITLGA TSATNVLSLA EMPQVPGKDN TAGKKPNIWY SLNGKIRAVN VPKVTKEKPT 840
  841 PPVEPTKPDE PVYEVEKELV DLPVEPSYEK EPTPPSKTPD QNIPDKPVEP TYEVEKELEP 900
  901 APVEPSYEKE PTPPSKTPDQ AIPDKPVEPT YEVEKELEPV PVETNYEKEP TPPQSTPDQE 960
  961 EPTKPVEPSY QSLPTPPVAP TYEKVPGPVS VPTVRYHYYK LAVQPGVTKK IKNQDDLDID1020
 1021 KTLVAKQSTV KFQLKTADLP AGRPETTSFV LMDPLPSGYQ LNLEATKVAS PGFEASYDAM1080
 1081 THTVTFIATA ETLAALNQDL TKAVATIYPT VVGQVLNDGA TYTNNFTLMV NDAYGIKSNI1140
 1141 VRVTTPGKPN DPDNPSNNYI TPHKVNKNEN GVVIDGKSVL AGTTNYYELT WDLDQYKGDK1200
 1201 SAKETIQKGF FYVDDYPEEA LDLRTDLIKL TDANGKAVTG VSVADYASLE AAPAAVQDML1260
 1261 KKANITPKGA FQVFTADDPQ AFYDAYVVTG TDLTIVTPMT VKAEMGKIGG SYENKAYQID1320
 1321 FGNGYESNIV INNVPQINPE KDVTLTMDPA DSTNVDGQTI ALNQVFNYRL IGGIIPADHA1380
 1381 EELFEYSFSD DYDQTGDQYT GQYKAFAKVD LTLKDGTIIK AGTDLTSYTE AQVDEANGQI1440
 1441 VVTFKEDFLR SVSVDSAFQA EVYLQMKRIA VGTFANTYVN TVNGITYSSN TVRTSTPEPK1500
 1501 QPSPVVPKTT TTVVFQPRQG QAYQPAPPAG AQLPATGDSS NAYLPLLGLV SLTAGFSLLG1560
 1561 LRRKQD

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