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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|440973
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.88
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTWRPSVV SVVGPVGLFL VLLARGCLAE EPPRFIREPK DQIGVSGGVA SFVCQATGDP  60
   61 KPRVTWNKKG KKVNSQRFET IDFDESSGAV LRIQPLRTPR DENVYECVAQ NSVGEITVHA 120
  121 KLTVLREDQL PPGFPNIDMG PQLKVVERTR TATMLCAASG NPDPEITWFK DFLPVDPSAS 180
  181 NGRIKQLRSG ALQIESSEET DQGKYECVAT NSAGVRYSSP ANLYVRVRRV APRFSILPMS 240
  241 HEIMPGGNVN ITCVAVGSPM PYVKWMQGAE DLTPEDDMPV GRNVLELTDV KDSANYTCVA 300
  301 MSSLGVIEAV AQITVKSLPK APGTPVVTEN TATSITVTWD SGNPDPVSYY VIEYKSKSQD 360
  361 GPYQIKEDIT TTRYSIGGLS PNSEYEIWVS AVNSIGQGPP SESVVTRTGE QAPASAPRNV 420
  421 QARMLSATTM IVQWEEPVEP NGLIRGYRVY YTMEPEHPVG NWQKHNVDDS LLTTVGSLLE 480
  481 DETYTVRVLA FTSVGDGPLS DPIQVKTQQG VPGQPMNLRA EAKSETSIGL SWSAPRQESV 540
  541 IKYELLFREG DRGREVGRTF DPTTAFVVED LKPNTEYAFR LAARSPQGLG AFTAVVRQRT 600
  601 LQAISPKNFK VKMIMKTSVL LSWEFPDNYN SPTPYKIQYN GLTLDVDGRT TKKLITHLKP 660
  661 HTFYNFVLTN RGSSLGGLQQ TVTARTAFNM LSGKPSVAPK PDNDGSIVVY LPDGQSPVTV 720
  721 QNYFIVMVPL RKSRGGQFPI LLGSPEDMDL EELIQDLSRL QRRSLRHSRQ LEVPRPYIAA 780
  781 RFSILPAVFH PGNQKQYGGF DNRGLEPGHR YVLFVLAVLQ KNEPTFAASP FSDPFQLDNP 840
  841 DPQPIVDGEE GLIWVIGPVL AVVFIICIVI AILLYKNKPD SKRKDSEPRT KCLLNNADLA 900
  901 PHHPKDPVEM RRINFQTPGM LSHPPIPITD MAEHMERLKA NDSLKLSQEY ESIDPGQQFT 960
  961 WEHSNLEANK PKNRYANVIA YDHSRVILQP LEGIMGSDYI NANYVDGYRR QNAYIATQGP1020
 1021 LPETFGDFWR MVWEQRSATV VMMTRLEEKS RVKCDQYWPN RGTETYGFIQ VTLLDTMELA1080
 1081 TFCVRTFSLH KNGSSEKREV RHFQFTAWPD HGVPEYPTPF LAFLRRVKTC NPPDAGPVVV1140
 1141 HCSAGVGRTG CFIVIDAMLE RIRTEKTVDV YGHVTLMRSQ RNYMVQTEDQ YSFIHEALLE1200
 1201 AVGCGNTEVP ARSLYTYIQK LAQVEPGEHV TGMELEFKRL ASSKAHTSRF ITASLPCNKF1260
 1261 KNRLVNILPY ESSRVCLQPI RGVEGSDYIN ASFIDGYRQQ KAYIATQGPL AETTEDFWRA1320
 1321 LWENNSTIVV MLTKLREMGR EKCHQYWPAE RSARYQYFVV DPMAEYNMPQ YILREFKVTD1380
 1381 ARDGQSRTVR QFQFTDWPEQ GAPKSGEGFI DFIGQVHKTK EQFGQDGPIS VHCSAGVGRT1440
 1441 GVFITLSIVL ERMRYEGVVD IFQTVKVLRT QRPAMVQTED EYQFCFQAAL EYLGSFDHYA1500
 1501 T

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