YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|478260, gi\|259989
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSRRQRGVAL LIVMLMLSLM VTIAASITER SGKAWQRTSN LLNRTQARWY ALGAEALISN  60
   61 VLQRDAQASP ESTFIGQPWS KVDHQMMADG TEIRAQALDG QACLNLNALS PARNVTPNNA 120
  121 SGNNTSGNNN AANGSSGNGN SPQPPKVGTS EQVPYAAQVF RQLMIVLGED PKQAERITDA 180
  181 LRDWLDEDSE PLMNGAEDDS YVNFHPGNQR MTDVTELRAV MGMDAALYRR LLPYVCVLPV 240
  241 DKLAINVNTL MPGSAPLLSA LFMGDISLDM AERILQQRPP QGWRNLNDFM GMSALPESGK 300
  301 NGARQVLVIK SDWFFADIQI RVDDSEFYQR SLFHRGKQIE VVQRQYGGYR TVNP

Type	Start	End	Confidence
Cytoplasmic	1	6	0.95
Transmembrane Helix	7	28	0.92
Non-Cytoplasmic	29	354	0.97