YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	INT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	47	0.91
Non-Cytoplasmic	48	74	0.90
Transmembrane Helix	75	94	0.95
Cytoplasmic	95	103	0.80
Transmembrane Helix	104	122	0.95
Non-Cytoplasmic	123	127	0.79
Transmembrane Helix	128	150	0.90
Cytoplasmic	151	158	0.89
Transmembrane Helix	159	179	0.90
Non-Cytoplasmic	180	189	0.78
Transmembrane Helix	190	211	0.90
Cytoplasmic	212	273	0.96
Transmembrane Helix	274	295	0.79
Non-Cytoplasmic	296	311	0.83
Transmembrane Helix	312	335	0.93
Cytoplasmic	336	342	0.87
Transmembrane Helix	343	363	0.94
Non-Cytoplasmic	364	373	0.80
Transmembrane Helix	374	397	0.85
Cytoplasmic	398	411	0.76
Transmembrane Helix	412	434	0.81
Non-Cytoplasmic	435	442	0.63
Transmembrane Helix	443	464	0.93
Cytoplasmic	465	509	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLTIPNAPG SSGYLDMFPE RRMSYFGNSY ILGLTVTAGI GGLLFGYDTG VISGALLYIK  60
   61 DDFEVVKQSS FLQETIVSMA LVGAMIGAAA GGWINDYYGR KKATLFADVV FAAGAIVMAA 120
  121 APDPYVLISG RLLVGLGVGV ASVTAPVYIA EASPSEVRGG LVSTNVLMIT GGQFLSYLVN 180
  181 SAFTQVPGTW RWMLGVSGVP AVIQFILMLF MPESPRWLFM KNRKAEAIQV LARTYDISRL 240
  241 EDEIDHLSAA EEEEKQRKRT VGYLDVFRSK ELRLAFLAGA GLQAFQQFTG INTVMYYSPT 300
  301 IVQMAGFHSN QLALFLSLIV AAMNAAGTVV GIYFIDHCGR KKLALSSLFG VIISLLILSV 360
  361 SFFKQSETSS DGGLYGWLAV LGLALYIVFF APGMGPVPWT VNSEIYPQQY RGICGGMSAT 420
  421 VNWISNLIVA QTFLTIAEAA GTGMTFLILA GIAVLAVIFV IVFVPETQGL TFSEVEQIWK 480
  481 ERAYGNISGW GSSSDSNNME GLLEQGSQS