YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBL18_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGPSGFNN APVTKAFVIA TALFTVFFGI RGGSSKLGLS YQDIFEKFRI WKLIISAFAF  60
   61 SSTTQLLSGL YLLYFFRVFE RQIGSNKYSV FIFFSGFVSL ILETILLSLT KDPTANLLTS 120
  121 GPYALVFASF VPFFLDIPVT KRFGVLGVHF SDKSFIYLAG VQLLLSSWKR SIFTGICGII 180
  181 AGSLYRLNIF GIRKAKFPEF MASLFSRFSL PSLSSHSQPP RRTSPNLGRQ AVRAYRAPMP 240
  241 STTEPSEEAI ATLVSMGFDQ NAARQALVHA RNDVNAATNI LLEAHSH

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.80
Transmembrane Helix	13	33	0.90
Cytoplasmic	34	52	0.74
Transmembrane Helix	53	75	0.90
Non-Cytoplasmic	76	87	0.79
Transmembrane Helix	88	109	0.90
Cytoplasmic	110	116	0.72
Transmembrane Helix	117	137	0.88
Non-Cytoplasmic	138	170	0.76
Transmembrane Helix	171	190	0.88
Cytoplasmic	191	287	0.87