YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30687791
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	164	0.92
Transmembrane Helix	165	185	0.86
Non-Cytoplasmic	186	190	0.76
Transmembrane Helix	191	214	0.87
Cytoplasmic	215	234	0.84
Transmembrane Helix	235	257	0.72
Non-Cytoplasmic	258	277	0.75
Transmembrane Helix	278	298	0.83
Cytoplasmic	299	305	0.62
Transmembrane Helix	306	327	0.95
Non-Cytoplasmic	328	341	0.65
Transmembrane Helix	342	366	0.73
Cytoplasmic	367	376	0.66
Transmembrane Helix	377	400	0.90
Non-Cytoplasmic	401	416	0.74
Transmembrane Helix	417	438	0.58
Cytoplasmic	439	460	0.79
Transmembrane Helix	461	482	0.91
Non-Cytoplasmic	483	487	0.73
Transmembrane Helix	488	510	0.90
Cytoplasmic	511	519	0.85
Transmembrane Helix	520	541	0.92
Non-Cytoplasmic	542	550	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR  60
   61 QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP ESLPTVTKPL LEEQADEQAL 120
  121 PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS 180
  181 TPYAAKEGGW LGLMILFVYG LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS 240
  241 IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD 300
  301 LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA 360
  361 VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM FGESTQSQFT LNLPQDLIAT 420
  421 KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP 480
  481 FFGLVMSLIG SLLTMLVTLI LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA 540
  541 LSKIVEKLTN