YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCP46_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLQCLTMA TSLILLLQAL SLVSSTILSR ADRITRLPGQ PRVGFQQYSG YVTIDEKKQR  60
   61 ALFYYLAEAE TKPISKPLVL WLNGGPGCSS LGVGAFSENG PFRPKGSILV RNQHSWNQEA 120
  121 NMLYLETPVG VGFSYANESS SYEGVNDKIT AKDNLVFLQK WFLKFPQYLN RSLFITGESY 180
  181 AGHYVPQLAQ LMIQYNKKHN LFNLKGIAIG NPVMEFATDF NSRAEYFWSH GLISDPTYKL 240
  241 FTSSCNYSRF LSEYHRGSVS SMCTKVLSQV GIETSRFIDK YDVTLDVCIP SVLSQSKVVS 300
  301 PQPQQVGETV DVCLEDETVN YLNRRDVQKA LHARLVGTRK WTVCSDVLDY EVLDVEVPTI 360
  361 NIVGSLVKAG VPVFVYSGDQ DSVIPLTGSR TLVKRLAEEL GLRTTVPYRV WFAGQQVGGW 420
  421 TQVYGNTLAF ATVRGAAHEV PFSQPARALV LFKAFLGGRP LPEEF

Type	Start	End	Confidence
Signal Peptide	1	31	0.90
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	465	0.99