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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCRK_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.71
Topology Confidence: 0.15
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMRVETALA ILLVLISIQQ CYGGVSNYTC TCFSSGNRSD ILESNCSTSC NCRPDRDQWV  60
   61 CLCPANGFPV IAIGGSNSSC FTSCNCSAGA TKSSKKQYLS RKLVIVILLF CGVLISLAFL 120
  121 ASMICYICRK DKFSGQTPSV SSDRESSWHS SANLINRKSS VSQSKISISS SVAGCFFQNA 180
  181 SLFCVSKPET IHGAIFQFSY TELEQATNKF SSNSVIGHGG SSCVYRGQLK DGKTAAIKRL 240
  241 NTPKGDDTDT LFSTEVELLS RLHHYHVVPL IGYCSEFHGK HAERLLVFEY MSYGSLRDCL 300
  301 DGELGEKMTW NIRISVALGA ARGLEYLHEA AAPRILHRDV KSTNILLDEN WHAKITDLGM 360
  361 AKCLSSDGLQ SGSSSPTTGL QGTFGYFAPE YAIAGCASQM SDVFSFGVVL LELITGRKPI 420
  421 QKPSNNKGEE SLVIWAVPRL QDSKRVIEEL PDPRLNGKFA EEEMQIMAYL AKECLLLDPE 480
  481 SRPTMREVVQ ILSTITPDTS SRRRNFPINY LFQSNEKKKE SKVGWSRGGS KSGQEEETVD 540
  541 LTEPRFESFC LPNVKPVLLE PSAHI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle