YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COPT6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHGNMPPSS PSSMVNHTNS NMIMMHMTFF WGKNTEILFS GWPGTSLGMY VLCLIVVFLL  60
   61 AVIVEWLAHS SILRGRGSTS RAKGLVQTAV YTLKTGLAYL VMLAVMSFNG GVFIVAIAGF 120
  121 AVGFMLFGST AFKNPSDDEK PFEQL

Type	Start	End	Confidence
Cytoplasmic	1	13	0.67
Transmembrane Helix	14	32	0.61
Non-Cytoplasmic	33	46	0.72
Transmembrane Helix	47	68	0.92
Cytoplasmic	69	84	0.81
Transmembrane Helix	85	106	0.67
Non-Cytoplasmic	107	109	0.52
Transmembrane Helix	110	132	0.81
Cytoplasmic	133	145	0.70