YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BASS2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.98
Transmembrane Helix	100	118	0.93
Non-Cytoplasmic	119	129	0.67
Transmembrane Helix	130	148	0.96
Cytoplasmic	149	158	0.83
Transmembrane Helix	159	180	0.87
Non-Cytoplasmic	181	186	0.68
Transmembrane Helix	187	207	0.86
Cytoplasmic	208	215	0.71
Transmembrane Helix	216	238	0.88
Non-Cytoplasmic	239	249	0.77
Transmembrane Helix	250	271	0.90
Cytoplasmic	272	281	0.77
Transmembrane Helix	282	303	0.92
Non-Cytoplasmic	304	313	0.75
Transmembrane Helix	314	335	0.92
Cytoplasmic	336	345	0.81
Transmembrane Helix	346	364	0.70
Non-Cytoplasmic	365	370	0.62
Transmembrane Helix	371	394	0.88
Cytoplasmic	395	409	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASISRILPT DGRLSQCRIN TSWVPSTTRT QTHLDFPKLV SVSNSGISLR IQNSKPISPV  60
   61 FALEATSSRR VVCKAAAGVS GDLPESTPKE LSQYEKIIEL LTTLFPLWVI LGTLVGIFKP 120
  121 SLVTWLETDL FTLGLGFLML SMGLTLTFED FRRCLRNPWT VGVGFLAQYM IKPILGFLIA 180
  181 MTLKLSAPLA TGLILVSCCP GGQASNVATY ISKGNVALSV LMTTCSTIGA IIMTPLLTKL 240
  241 LAGQLVPVDA AGLALSTFQV VLVPTIIGVL ANEFFPKFTS KIITVTPLIG VILTTLLCAS 300
  301 PIGQVADVLK TQGAQLILPV ALLHAAAFAI GYWISKFSFG ESTSRTISIE CGMQSSALGF 360
  361 LLAQKHFTNP LVAVPSAVSV VCMALGGSGL AVFWRNLPIP ADDKDDFKE