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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PME13_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFQDFDKIQ ERVNANRKRK FRKRIIVGTV SLLVVVAAIV GGAFAYVAYE KRNEQQQQQQ  60
   61 QAKNHNKSGS GNNVVKDSDK KSPSPPTPSQ KAPVSAAQSV KPGQGDKIIQ TLCSSTLYMQ 120
  121 ICEKTLKNRT DKGFALDNPT TFLKSAIEAV NEDLDLVLEK VLSLKTENQD DKDAIEQCKL 180
  181 LVEDAKEETV ASLNKINVTE VNSFEKVVPD LESWLSAVMS YQETCLDGFE EGNLKSEVKT 240
  241 SVNSSQVLTS NSLALIKTFT ENLSPVMKVV ERHLLDDIPS WVSNDDRRML RAVDVKALKP 300
  301 NATVAKDGSG DFTTINDALR AMPEKYEGRY IIYVKQGIYD EYVTVDKKKA NLTMVGDGSQ 360
  361 KTIVTGNKSH AKKIRTFLTA TFVAQGEGFM AQSMGFRNTA GPEGHQAVAI RVQSDRSIFL 420
  421 NCRFEGYQDT LYAYTHRQYY RSCVIVGTID FIFGDAAAIF QNCNIFIRKG LPGQKNTVTA 480
  481 QGRVDKFQTT GFVVHNCKIA ANEDLKPVKE EYKSYLGRPW KNYSRTIIME SKIENVIDPV 540
  541 GWLRWQETDF AIDTLYYAEY NNKGSSGDTT SRVKWPGFKV INKEEALNYT VGPFLQGDWI 600
  601 SASGSPVKLG LYDA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle