YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P4H5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKSKQHLR YQPRKSVSRS TQAFTVLILL LVVILILLGL GILSLPNANR NSSKTNDLTN  60
   61 IVRKSETSSG DEEGNGERWV EVISWEPRAV VYHNFLTNEE CEHLISLAKP SMVKSTVVDE 120
  121 KTGGSKDSRV RTSSGTFLRR GHDEVVEVIE KRISDFTFIP VENGEGLQVL HYQVGQKYEP 180
  181 HYDYFLDEFN TKNGGQRIAT VLMYLSDVDD GGETVFPAAR GNISAVPWWN ELSKCGKEGL 240
  241 SVLPKKRDAL LFWNMRPDAS LDPSSLHGGC PVVKGNKWSS TKWFHVHEFK V

Type	Start	End	Confidence
Cytoplasmic	1	20	0.64
Transmembrane Helix	21	43	0.63
Non-Cytoplasmic	44	291	0.99