YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|79934, gi|46521
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.84
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKSNYERKM RYSIRKFSVG VASVAVRSLF MGSVAHASEL VKDDSVKTTE VAAKPYPSMA  60
   61 QTDQGNNSSS SELETTKMEI PTTDIKKAVE PVEKTAGETS ATDTGKREKQ LQQWKNNLKN 120
  121 DVDNTILSHE QKNEFKTKID ETNDSDALLE LENQFNETNR LLHIKQHEEV EKDKKAKQQK 180
  181 TLKQSDTKVD LSNIDKELNH QKSQVEKMAE QKGITNEDKD SMLKKIEDIR KQAQQADKKE 240
  241 DAEVKVREEL GKLFSSTKAG LDQEIQEHVK KETSSEENTQ KVDEHYANSL QNLAQKSLEE 300
  301 LDKATTNEQA TQVKNQFLEN AQKLKEIQPL IKETNVKLYK AMSESLEQVE KELKHNSEAN 360
  361 LEDLVAKSKE IVREYEGKLN QSKNLPELKQ LEEEAHSKLK QVVEDFRKKF KTSEQVTPKK 420
  421 RVKRDLAANE NNQQKIELTV SPENITVYEG EDVKFTVTAK SDSKTTLDFS DLLTKYNPSV 480
  481 SDRISTNYKT NTDNHKIAEI TIKNLKLNES QTVTLKAKDD SGNVVEKTFT ITVQKKEEKQ 540
  541 VPKTPEQKDS KTEEKVPQEP KSNDKNQLQE LIKSAQQELE KLEKAIKELM EQPEIPSNPE 600
  601 YGIQKSIWES QKEPIQEAIT SFKKIIGDSS SKYYTEHYFN KYKSDFMNYQ LHAQMEMLTR 660
  661 KVVQYMNKYP DNAEIKKIFE SDMKRTKEDN YGSLENDALK GYFEKYFLTP FNKIKQIVDD 720
  721 LDKKVEQDQP APIPENSEMD QAKEKAKIAV SKYMSKVLDG VHQHLQKKNH SKIVDLFKEL 780
  781 EAIKQQTIFD IDNAKTEVEI DNLVHDAFSK MNATVAKFQK GLETNTPETP DTPKIPELPQ 840
  841 APDTPQAPDT PHVPESPKAP EAPRVPESPK TPEAPHVPES PKTPEAPKIP EPPKTPDVPK 900
  901 LPDVPKLPDA PKLPDGLNKV GQAVFTSTDG NTKVTVVFDK PTDADKLHLK EVTTKELADK 960
  961 IAHKTGGGTV RVFDLSLSKG GKETHVNGER TVRLALGQTG SDVHVYHVKE NGDLERIPSK1020
 1021 VENGQVVFKT NHFSLFAIKT LSKDQNVTPP KQTKPSTQGS QVEIAESQTG KFQSKAANHK1080
 1081 ALATGNETVA KGNPTSTTEK KLPYTGVASN LVLEIMGLLG LIGTSFIAMK RRKS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle