YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1165014
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLCHDGRAV AGELLQPVVE LLLLGGGVGV QPADGLVALL QDGVLVGLVQ LSGASLLHRL  60
   61 LHVEDVALQR VPRGDALAVL LVLVCVLLRL VYHAVDLSLR EPSLVVLDCD VLGLARAHLL 120
  121 GRDVQDAVGV HVEGDLDLGH STRGWRNAGQ VEGAQRIVVL GHRALALVHL DGDSGLVVRV 180
  181 RGEGLRLLAR DAAVALDQLG HHPAGGLDAE REGSHVHQQH VLDLSGLVAA EDRGLHGGSV 240
  241 GHCLVGIDGQ VEALAVEVLL QQGLDLGDAS GAAHKHDVVD LALVHLGVGE RLLHGLQGVA 300
  301 EEVCAQLLEA GAAHLGVEVV ALEQRVDLDG GFRAGGQCAL CPLSSRAEAA QGSGVGAEVL 360
  361 SELALELIGQ VGDQPVVEVL TAQVRVSGGG PDLEQGSLVD GQDGDVEGAA AQVEDEHVAL 420
  421 PLEVLVQPVG QCRRRGLVDD PEHVQPGDAA GVLGGLALRV VEVGGHSDDR VRDRLAQIGL 480
  481 RRLPHLDQHH RADFLGGEAL GLALELHADL GLSAVADHLE GPVLHVLRDL RVVVLASDEA 540
  541 LGVKHRVPGV HRHLVLGRVA DQTLGVCECH VGGRGAVALV VGDDLHLSML VDAHAGVRGA 600
  601 QVDSNGRHCV CFV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.59
Transmembrane Helix	14	30	0.49
Non-Cytoplasmic	31	37	0.60
Transmembrane Helix	38	61	0.62
Cytoplasmic	62	75	0.77
Transmembrane Helix	76	95	0.84
Non-Cytoplasmic	96	613	0.99